J5_8PJ1_001
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 8PJ1|1|A|C|593
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8PJ1_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1422
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8PJ1|1|A|C|30
8PJ1|1|A|U|31
8PJ1|1|A|U|32
8PJ1|1|A|G|33
8PJ1|1|A|U|34
*
8PJ1|1|A|A|521
8PJ1|1|A|A|522
8PJ1|1|A|A|523
8PJ1|1|A|U|524
8PJ1|1|A|A|525
8PJ1|1|A|A|526
8PJ1|1|A|C|527
*
8PJ1|1|A|G|558
8PJ1|1|A|G|559
8PJ1|1|A|A|560
8PJ1|1|A|A|561
8PJ1|1|A|U|562
8PJ1|1|A|G|563
*
8PJ1|1|A|C|592
8PJ1|1|A|C|593
8PJ1|1|A|A|594
8PJ1|1|A|U|595
*
8PJ1|1|A|A|641
8PJ1|1|A|U|642
8PJ1|1|A|A|643
8PJ1|1|A|OMG|644
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 1
- Eukaryotic translation initiation factor 3 subunit B
- Chain D
- 40S ribosomal protein S9
- Chain E
- 40S ribosomal protein S23
- Chain F
- 40S ribosomal protein S30
Coloring options: