J5_8PPK_001

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

8PPK|1|2|C|593

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8PPK_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1229

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8PPK|1|2|C|30
8PPK|1|2|U|31
8PPK|1|2|U|32
8PPK|1|2|G|33
8PPK|1|2|PSU|34
*
8PPK|1|2|A|521
8PPK|1|2|A|522
8PPK|1|2|A|523
8PPK|1|2|U|524
8PPK|1|2|A|525
8PPK|1|2|A|526
8PPK|1|2|C|527
*
8PPK|1|2|G|558
8PPK|1|2|G|559
8PPK|1|2|A|560
8PPK|1|2|A|561
8PPK|1|2|U|562
8PPK|1|2|G|563
*
8PPK|1|2|C|592
8PPK|1|2|C|593
8PPK|1|2|A|594
8PPK|1|2|U|595
*
8PPK|1|2|A|641
8PPK|1|2|U|642
8PPK|1|2|A|643
8PPK|1|2|OMG|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

Small ribosomal subunit protein eS30