J5_8Q4F_003

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8Q4F|1|a|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8Q4F_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0862

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8Q4F|1|a|C|584
8Q4F|1|a|G|585
8Q4F|1|a|A|586
8Q4F|1|a|C|587
8Q4F|1|a|U|588
8Q4F|1|a|U|589
*
8Q4F|1|a|A|668
8Q4F|1|a|G|669
8Q4F|1|a|A|670
8Q4F|1|a|C|671
*
8Q4F|1|a|G|809
8Q4F|1|a|U|810
8Q4F|1|a|U|811
8Q4F|1|a|C|812
*
8Q4F|1|a|G|1195
8Q4F|1|a|C|1196
*
8Q4F|1|a|G|1250
8Q4F|1|a|C|1251
8Q4F|1|a|G|1252
8Q4F|1|a|A|1253
8Q4F|1|a|A|1254
8Q4F|1|a|U|1255
8Q4F|1|a|G|1256

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21