J5_8QCQ_005
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8QCQ|1|A|G|1787, 8QCQ|1|A|G|1792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QCQ_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0719
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8QCQ|1|A|G|1719
8QCQ|1|A|C|1720
8QCQ|1|A|A|1721
8QCQ|1|A|A|1722
8QCQ|1|A|A|1723
8QCQ|1|A|A|1724
8QCQ|1|A|U|1725
8QCQ|1|A|G|1726
8QCQ|1|A|A|1727
*
8QCQ|1|A|U|1751
8QCQ|1|A|G|1752
*
8QCQ|1|A|C|1780
8QCQ|1|A|C|1781
*
8QCQ|1|A|G|1785
8QCQ|1|A|U|1786
8QCQ|1|A|G|1787
8QCQ|1|A|A|1788
8QCQ|1|A|A|1789
8QCQ|1|A|U|1790
8QCQ|1|A|A|1791
8QCQ|1|A|G|1792
8QCQ|1|A|G|1793
*
8QCQ|1|A|C|2017
8QCQ|1|A|A|2018
8QCQ|1|A|C|2019
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: