J5_8QOI_006
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 8QOI|1|S2|C|593
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QOI_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1216
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8QOI|1|S2|C|30
8QOI|1|S2|U|31
8QOI|1|S2|U|32
8QOI|1|S2|G|33
8QOI|1|S2|PSU|34
*
8QOI|1|S2|A|521
8QOI|1|S2|A|522
8QOI|1|S2|A|523
8QOI|1|S2|U|524
8QOI|1|S2|A|525
8QOI|1|S2|A|526
8QOI|1|S2|C|527
*
8QOI|1|S2|G|558
8QOI|1|S2|G|559
8QOI|1|S2|A|560
8QOI|1|S2|A|561
8QOI|1|S2|U|562
8QOI|1|S2|G|563
*
8QOI|1|S2|C|592
8QOI|1|S2|C|593
8QOI|1|S2|A|594
8QOI|1|S2|U|595
*
8QOI|1|S2|A|641
8QOI|1|S2|U|642
8QOI|1|S2|A|643
8QOI|1|S2|OMG|644
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: