J5_8QPP_003

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8QPP|1|X|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8QPP_003 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1051

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8QPP|1|X|C|47
8QPP|1|X|G|48
8QPP|1|X|A|49
8QPP|1|X|U|50
8QPP|1|X|G|51
8QPP|1|X|A|52
8QPP|1|X|A|53
8QPP|1|X|G|54
*
8QPP|1|X|C|115
8QPP|1|X|G|116
8QPP|1|X|A|117
8QPP|1|X|A|118
8QPP|1|X|U|119
8QPP|1|X|G|120
*
8QPP|1|X|C|129
8QPP|1|X|A|130
*
8QPP|1|X|U|149
8QPP|1|X|A|150
8QPP|1|X|U|151
*
8QPP|1|X|A|178
8QPP|1|X|A|179
8QPP|1|X|G|180

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23