J5_8QPP_005
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UA*UA
- Length
- 15 nucleotides
- Bulged bases
- 8QPP|1|X|A|578, 8QPP|1|X|U|606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QPP_005 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.0777
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QPP|1|X|U|577
8QPP|1|X|A|578
8QPP|1|X|G|579
*
8QPP|1|X|C|604
8QPP|1|X|G|605
8QPP|1|X|U|606
8QPP|1|X|G|607
8QPP|1|X|C|608
*
8QPP|1|X|G|621
8QPP|1|X|A|622
8QPP|1|X|A|623
*
8QPP|1|X|U|1301
8QPP|1|X|A|1302
*
8QPP|1|X|U|2046
8QPP|1|X|A|2047
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain b
- Large ribosomal subunit protein uL4
- Chain n
- Large ribosomal subunit protein bL20
- Chain o
- Large ribosomal subunit protein bL21
- Chain r
- Large ribosomal subunit protein uL22
Coloring options: