3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
GUG*CGAUGAAG*CGAACG*CG*UAC
Length
22 nucleotides
Bulged bases
8QYX|1|C2|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8QYX_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.0959
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_27223.1
Basepair signature
cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8QYX|1|A2|G|19
8QYX|1|A2|U|20
8QYX|1|A2|G|21
*
8QYX|1|C2|C|35
8QYX|1|C2|G|36
8QYX|1|C2|A|37
8QYX|1|C2|U|38
8QYX|1|C2|G|39
8QYX|1|C2|A|40
8QYX|1|C2|A|41
8QYX|1|C2|G|42
*
8QYX|1|C2|C|101
8QYX|1|C2|G|102
8QYX|1|C2|A|103
8QYX|1|C2|A|104
8QYX|1|C2|C|105
8QYX|1|C2|G|106
*
8QYX|1|C2|C|113
8QYX|1|C2|G|114
*
8QYX|1|C2|U|136
8QYX|1|C2|A|137
8QYX|1|C2|C|138

Current chains

Chain A2
28S rRNA
Chain C2
5.8S rRNA

Nearby chains

Chain H1
60S ribosomal protein L15
Chain R1
60S ribosomal protein L23a
Chain b1
60S ribosomal protein L35
Chain d1
60S ribosomal protein L37
Chain f1
60S ribosomal protein L39

Coloring options:


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