J5_8R8M_009

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

8R8M|1|a|U|2076, 8R8M|1|a|G|2428, 8R8M|1|a|G|2429, 8R8M|1|a|A|2430, 8R8M|1|a|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8R8M_009 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0823

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8R8M|1|a|U|2074
8R8M|1|a|U|2075
8R8M|1|a|U|2076
8R8M|1|a|A|2077
*
8R8M|1|a|U|2243
8R8M|1|a|U|2244
8R8M|1|a|U|2245
8R8M|1|a|G|2246
*
8R8M|1|a|C|2258
8R8M|1|a|U|2259
*
8R8M|1|a|A|2281
8R8M|1|a|G|2282
*
8R8M|1|a|C|2427
8R8M|1|a|G|2428
8R8M|1|a|G|2429
8R8M|1|a|A|2430
8R8M|1|a|U|2431
8R8M|1|a|A|2432
8R8M|1|a|A|2433
8R8M|1|a|A|2434
8R8M|1|a|A|2435

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain 2

Large ribosomal subunit protein bL35

Chain Z

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2

Chain k

50S ribosomal protein L15

Chain v

Large ribosomal subunit protein bL27

Chain w

Large ribosomal subunit protein bL28