J5_8RCM_003

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8RCM|1|72|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCM_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.1139

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8RCM|1|72|C|584
8RCM|1|72|G|585
8RCM|1|72|A|586
8RCM|1|72|C|587
8RCM|1|72|U|588
8RCM|1|72|U|589
*
8RCM|1|72|A|668
8RCM|1|72|G|669
8RCM|1|72|A|670
8RCM|1|72|C|671
*
8RCM|1|72|G|809
8RCM|1|72|U|810
8RCM|1|72|U|811
8RCM|1|72|C|812
*
8RCM|1|72|G|1195
8RCM|1|72|C|1196
*
8RCM|1|72|G|1250
8RCM|1|72|C|1251
8RCM|1|72|G|1252
8RCM|1|72|A|1253
8RCM|1|72|A|1254
8RCM|1|72|U|1255
8RCM|1|72|G|1256

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35

Chain o2

50S ribosomal protein L15