J5_8RCS_003

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8RCS|1|72|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCS_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0569

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8RCS|1|72|C|584
8RCS|1|72|G|585
8RCS|1|72|A|586
8RCS|1|72|C|587
8RCS|1|72|U|588
8RCS|1|72|U|589
*
8RCS|1|72|A|668
8RCS|1|72|G|669
8RCS|1|72|A|670
8RCS|1|72|C|671
*
8RCS|1|72|G|809
8RCS|1|72|U|810
8RCS|1|72|U|811
8RCS|1|72|C|812
*
8RCS|1|72|G|1195
8RCS|1|72|C|1196
*
8RCS|1|72|G|1250
8RCS|1|72|C|1251
8RCS|1|72|G|1252
8RCS|1|72|A|1253
8RCS|1|72|A|1254
8RCS|1|72|U|1255
8RCS|1|72|G|1256

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35

Chain o2

50S ribosomal protein L15