J5_8RCT_003

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8RCT|1|72|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RCT_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0537

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8RCT|1|72|C|584
8RCT|1|72|G|585
8RCT|1|72|A|586
8RCT|1|72|C|587
8RCT|1|72|U|588
8RCT|1|72|U|589
*
8RCT|1|72|A|668
8RCT|1|72|G|669
8RCT|1|72|A|670
8RCT|1|72|C|671
*
8RCT|1|72|G|809
8RCT|1|72|U|810
8RCT|1|72|U|811
8RCT|1|72|C|812
*
8RCT|1|72|G|1195
8RCT|1|72|C|1196
*
8RCT|1|72|G|1250
8RCT|1|72|C|1251
8RCT|1|72|G|1252
8RCT|1|72|A|1253
8RCT|1|72|A|1254
8RCT|1|72|U|1255
8RCT|1|72|G|1256

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35

Chain o2

50S ribosomal protein L15