J5_8RJC_002
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8RJC|1|K|C|2289, 8RJC|1|K|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RJC_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0598
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJC|1|K|G|1335
8RJC|1|K|G|1336
8RJC|1|K|A|1337
8RJC|1|K|G|1338
8RJC|1|K|U|1339
8RJC|1|K|C|1340
*
8RJC|1|K|G|1516
8RJC|1|K|G|1517
8RJC|1|K|A|1518
8RJC|1|K|C|1519
*
8RJC|1|K|G|1658
8RJC|1|K|U|1659
8RJC|1|K|U|1660
8RJC|1|K|C|1661
*
8RJC|1|K|G|2288
8RJC|1|K|C|2289
8RJC|1|K|C|2290
*
8RJC|1|K|G|2345
8RJC|1|K|C|2346
8RJC|1|K|A|2347
8RJC|1|K|G|2348
8RJC|1|K|A|2349
8RJC|1|K|U|2350
8RJC|1|K|C|2351
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Ribosomal protein L32
- Chain r
- 60S ribosomal protein L28
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: