J5_8RPZ_003
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8RPZ|1|A|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RPZ_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0501
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8RPZ|1|A|C|584
8RPZ|1|A|G|585
8RPZ|1|A|A|586
8RPZ|1|A|C|587
8RPZ|1|A|U|588
8RPZ|1|A|U|589
*
8RPZ|1|A|A|668
8RPZ|1|A|G|669
8RPZ|1|A|A|670
8RPZ|1|A|C|671
*
8RPZ|1|A|G|809
8RPZ|1|A|U|810
8RPZ|1|A|U|811
8RPZ|1|A|C|812
*
8RPZ|1|A|G|1195
8RPZ|1|A|C|1196
*
8RPZ|1|A|G|1250
8RPZ|1|A|C|1251
8RPZ|1|A|G|1252
8RPZ|1|A|A|1253
8RPZ|1|A|A|1254
8RPZ|1|A|U|1255
8RPZ|1|A|G|1256
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain E
- Large ribosomal subunit protein uL4
- Chain L
- Large ribosomal subunit protein uL15
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Large ribosomal subunit protein bL21
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