J5_8RRI_001
3D structure
- PDB id
- 8RRI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with antibiotic tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAA*UAUAC*GAA*UA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8RRI|1|A|A|1828, 8RRI|1|A|U|1843
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RRI_001 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1318
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8RRI|1|A|C|1827
8RRI|1|A|A|1828
8RRI|1|A|A|1829
*
8RRI|1|A|U|1841
8RRI|1|A|A|1842
8RRI|1|A|U|1843
8RRI|1|A|A|1844
8RRI|1|A|C|1845
*
8RRI|1|A|G|1858
8RRI|1|A|A|1859
8RRI|1|A|A|1860
*
8RRI|1|A|U|2305
8RRI|1|A|A|2306
*
8RRI|1|A|U|2680
8RRI|1|A|G|2681
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain K
- Large ribosomal subunit protein uL13m
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain a
- 39S ribosomal protein L42, mitochondrial
- Chain b
- 39S ribosomal protein L43, mitochondrial
Coloring options: