J5_8RW1_001

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAC*GUAG

Length

26 nucleotides

Bulged bases

8RW1|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8RW1_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0866

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8RW1|1|2|C|31
8RW1|1|2|U|32
8RW1|1|2|U|33
8RW1|1|2|G|34
8RW1|1|2|U|35
*
8RW1|1|2|A|472
8RW1|1|2|A|473
8RW1|1|2|A|474
8RW1|1|2|U|475
8RW1|1|2|A|476
8RW1|1|2|A|477
8RW1|1|2|C|478
*
8RW1|1|2|G|508
8RW1|1|2|G|509
8RW1|1|2|A|510
8RW1|1|2|A|511
8RW1|1|2|U|512
8RW1|1|2|G|513
*
8RW1|1|2|C|542
8RW1|1|2|A|543
8RW1|1|2|A|544
8RW1|1|2|C|545
*
8RW1|1|2|G|591
8RW1|1|2|U|592
8RW1|1|2|A|593
8RW1|1|2|G|594

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p

Chain e

40S ribosomal protein S30