J5_8RXH_001
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AGG*CGUUGAAG*(PSU)GAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8RXH|1|L7|U|38
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8RXH_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.2038
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RXH|1|L1|A|18
8RXH|1|L1|G|19
8RXH|1|L1|G|20
*
8RXH|1|L7|C|35
8RXH|1|L7|G|36
8RXH|1|L7|U|37
8RXH|1|L7|U|38
8RXH|1|L7|G|39
8RXH|1|L7|A|40
8RXH|1|L7|A|41
8RXH|1|L7|G|42
*
8RXH|1|L7|PSU|101
8RXH|1|L7|G|102
8RXH|1|L7|A|103
8RXH|1|L7|A|104
8RXH|1|L7|C|105
8RXH|1|L7|G|106
*
8RXH|1|L7|C|114
8RXH|1|L7|G|115
*
8RXH|1|L7|C|148
8RXH|1|L7|A|149
8RXH|1|L7|U|150
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L7
- 5.8S_rRNA_chain_7
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- Ribosomal protein L15
- Chain LV
- Putative 60S ribosomal protein L23a
- Chain La
- Putative 60S ribosomal protein L35
- Chain Lj
- Ribosomal protein L37
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