J5_8S8H_001

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAC*GUAG

Length

26 nucleotides

Bulged bases

8S8H|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8S8H_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.115

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8S8H|1|2|C|31
8S8H|1|2|U|32
8S8H|1|2|U|33
8S8H|1|2|G|34
8S8H|1|2|U|35
*
8S8H|1|2|A|472
8S8H|1|2|A|473
8S8H|1|2|A|474
8S8H|1|2|U|475
8S8H|1|2|A|476
8S8H|1|2|A|477
8S8H|1|2|C|478
*
8S8H|1|2|G|508
8S8H|1|2|G|509
8S8H|1|2|A|510
8S8H|1|2|A|511
8S8H|1|2|U|512
8S8H|1|2|G|513
*
8S8H|1|2|C|542
8S8H|1|2|A|543
8S8H|1|2|A|544
8S8H|1|2|C|545
*
8S8H|1|2|G|591
8S8H|1|2|U|592
8S8H|1|2|A|593
8S8H|1|2|G|594

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p

Chain e

40S ribosomal protein S30