J5_8SCB_006
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 8SCB|1|9|C|593
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8SCB_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1244
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8SCB|1|9|C|30
8SCB|1|9|U|31
8SCB|1|9|U|32
8SCB|1|9|G|33
8SCB|1|9|PSU|34
*
8SCB|1|9|A|521
8SCB|1|9|A|522
8SCB|1|9|A|523
8SCB|1|9|U|524
8SCB|1|9|A|525
8SCB|1|9|A|526
8SCB|1|9|C|527
*
8SCB|1|9|G|558
8SCB|1|9|G|559
8SCB|1|9|A|560
8SCB|1|9|A|561
8SCB|1|9|U|562
8SCB|1|9|G|563
*
8SCB|1|9|C|592
8SCB|1|9|C|593
8SCB|1|9|A|594
8SCB|1|9|U|595
*
8SCB|1|9|A|641
8SCB|1|9|U|642
8SCB|1|9|A|643
8SCB|1|9|OMG|644
Current chains
- Chain 9
- 18S_rRNA
Nearby chains
- Chain JJ
- uS4
- Chain XX
- uS12
- Chain ee
- eS30
Coloring options: