J5_8T2Z_007

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8T2Z|1|B5|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8T2Z_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1048

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8T2Z|1|B5|C|31
8T2Z|1|B5|U|32
8T2Z|1|B5|U|33
8T2Z|1|B5|G|34
8T2Z|1|B5|U|35
*
8T2Z|1|B5|A|473
8T2Z|1|B5|A|474
8T2Z|1|B5|A|475
8T2Z|1|B5|U|476
8T2Z|1|B5|A|477
8T2Z|1|B5|A|478
8T2Z|1|B5|C|479
*
8T2Z|1|B5|G|509
8T2Z|1|B5|G|510
8T2Z|1|B5|A|511
8T2Z|1|B5|A|512
8T2Z|1|B5|U|513
8T2Z|1|B5|G|514
*
8T2Z|1|B5|C|543
8T2Z|1|B5|A|544
8T2Z|1|B5|A|545
8T2Z|1|B5|U|546
*
8T2Z|1|B5|A|592
8T2Z|1|B5|U|593
8T2Z|1|B5|A|594
8T2Z|1|B5|G|595

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A