J5_8T3A_003
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8T3A|1|A1|U|719, 8T3A|1|A1|A|784, 8T3A|1|A1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8T3A_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0963
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8T3A|1|A1|C|675
8T3A|1|A1|G|676
8T3A|1|A1|A|677
8T3A|1|A1|G|678
*
8T3A|1|A1|C|702
8T3A|1|A1|G|703
8T3A|1|A1|U|704
8T3A|1|A1|A|705
8T3A|1|A1|A|706
*
8T3A|1|A1|U|713
8T3A|1|A1|G|714
8T3A|1|A1|A|715
8T3A|1|A1|A|716
8T3A|1|A1|C|717
8T3A|1|A1|G|718
8T3A|1|A1|U|719
8T3A|1|A1|A|720
8T3A|1|A1|G|721
*
8T3A|1|A1|C|749
8T3A|1|A1|G|750
8T3A|1|A1|A|751
*
8T3A|1|A1|U|782
8T3A|1|A1|A|783
8T3A|1|A1|A|784
8T3A|1|A1|G|785
8T3A|1|A1|A|786
8T3A|1|A1|G|787
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AL
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- RPL29 isoform 1
- Chain Ai
- 60S ribosomal protein L36-A
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