J5_8T3C_009
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GCAG
- Length
- 22 nucleotides
- Bulged bases
- 8T3C|1|B5|U|56, 8T3C|1|B5|A|93, 8T3C|1|B5|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8T3C_009 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.5152
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8T3C|1|B5|C|54
8T3C|1|B5|A|55
8T3C|1|B5|U|56
8T3C|1|B5|G|57
*
8T3C|1|B5|C|90
8T3C|1|B5|G|91
8T3C|1|B5|A|92
8T3C|1|B5|A|93
8T3C|1|B5|U|94
8T3C|1|B5|G|95
8T3C|1|B5|G|96
8T3C|1|B5|C|97
*
8T3C|1|B5|G|386
8T3C|1|B5|A|387
8T3C|1|B5|G|388
*
8T3C|1|B5|C|409
8T3C|1|B5|A|410
8T3C|1|B5|C|411
*
8T3C|1|B5|G|423
8T3C|1|B5|C|424
8T3C|1|B5|A|425
8T3C|1|B5|G|426
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L23-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BI
- 40S ribosomal protein S8-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BY
- 40S ribosomal protein S24-A
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