J5_8T3D_007
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 8T3D|1|B5|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8T3D_007 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1718
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8T3D|1|B5|C|31
8T3D|1|B5|U|32
8T3D|1|B5|U|33
8T3D|1|B5|G|34
8T3D|1|B5|U|35
*
8T3D|1|B5|A|473
8T3D|1|B5|A|474
8T3D|1|B5|A|475
8T3D|1|B5|U|476
8T3D|1|B5|A|477
8T3D|1|B5|A|478
8T3D|1|B5|C|479
*
8T3D|1|B5|G|509
8T3D|1|B5|G|510
8T3D|1|B5|A|511
8T3D|1|B5|A|512
8T3D|1|B5|U|513
8T3D|1|B5|G|514
*
8T3D|1|B5|C|543
8T3D|1|B5|A|544
8T3D|1|B5|A|545
8T3D|1|B5|U|546
*
8T3D|1|B5|A|592
8T3D|1|B5|U|593
8T3D|1|B5|A|594
8T3D|1|B5|G|595
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain DC
- Elongation factor 2
Coloring options: