J5_8T4S_001

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

8T4S|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8T4S_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0657

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8T4S|1|2|C|30
8T4S|1|2|U|31
8T4S|1|2|U|32
8T4S|1|2|G|33
8T4S|1|2|U|34
*
8T4S|1|2|A|521
8T4S|1|2|A|522
8T4S|1|2|A|523
8T4S|1|2|U|524
8T4S|1|2|A|525
8T4S|1|2|A|526
8T4S|1|2|C|527
*
8T4S|1|2|G|558
8T4S|1|2|G|559
8T4S|1|2|A|560
8T4S|1|2|A|561
8T4S|1|2|U|562
8T4S|1|2|G|563
*
8T4S|1|2|C|592
8T4S|1|2|C|593
8T4S|1|2|A|594
8T4S|1|2|U|595
*
8T4S|1|2|A|641
8T4S|1|2|U|642
8T4S|1|2|A|643
8T4S|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

FAU ubiquitin-like and ribosomal protein S30