J5_8T5H_004
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 8T5H|1|B|U|1758, 8T5H|1|B|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8T5H_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0894
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8T5H|1|B|G|1674
8T5H|1|B|C|1675
8T5H|1|B|A|1676
8T5H|1|B|A|1677
8T5H|1|B|A|1678
8T5H|1|B|A|1679
8T5H|1|B|U|1680
8T5H|1|B|G|1681
8T5H|1|B|G|1682
*
8T5H|1|B|C|1706
8T5H|1|B|G|1707
*
8T5H|1|B|U|1751
8T5H|1|B|C|1752
*
8T5H|1|B|G|1756
8T5H|1|B|A|1757
8T5H|1|B|U|1758
8T5H|1|B|A|1759
8T5H|1|B|C|1760
8T5H|1|B|C|1761
8T5H|1|B|A|1762
8T5H|1|B|G|1763
8T5H|1|B|C|1764
*
8T5H|1|B|G|1988
8T5H|1|B|G|1989
8T5H|1|B|C|1990
Current chains
- Chain B
- 23S
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain v
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: