J5_8UD6_010

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8UD6|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UD6_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0544

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8UD6|1|2A|C|47
8UD6|1|2A|G|48
8UD6|1|2A|A|49
8UD6|1|2A|U|50
8UD6|1|2A|G|51
8UD6|1|2A|A|52
8UD6|1|2A|A|53
8UD6|1|2A|G|54
*
8UD6|1|2A|C|116
8UD6|1|2A|G|117
8UD6|1|2A|A|118
8UD6|1|2A|A|119
8UD6|1|2A|U|120
8UD6|1|2A|G|121
*
8UD6|1|2A|C|130
8UD6|1|2A|G|131
*
8UD6|1|2A|C|148
8UD6|1|2A|A|149
8UD6|1|2A|C|150
*
8UD6|1|2A|G|176
8UD6|1|2A|G|177
8UD6|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23