J5_8UD6_012
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8UD6|1|2A|A|532, 8UD6|1|2A|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UD6_012 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0638
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UD6|1|2A|C|531
8UD6|1|2A|A|532
8UD6|1|2A|G|533
*
8UD6|1|2A|C|560
8UD6|1|2A|G|561
8UD6|1|2A|U|562
8UD6|1|2A|G|563
8UD6|1|2A|C|564
*
8UD6|1|2A|G|577
8UD6|1|2A|A|578
8UD6|1|2A|G|579
*
8UD6|1|2A|C|1261
8UD6|1|2A|A|1262
*
8UD6|1|2A|U|2017
8UD6|1|2A|G|2018
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 2F
- 50S ribosomal protein L4
- Chain 2U
- 50S ribosomal protein L20
- Chain 2V
- 50S ribosomal protein L21
- Chain 2W
- 50S ribosomal protein L22
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