3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
8UD6|1|2A|A|532, 8UD6|1|2A|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8UD6_012 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.0638
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8UD6|1|2A|C|531
8UD6|1|2A|A|532
8UD6|1|2A|G|533
*
8UD6|1|2A|C|560
8UD6|1|2A|G|561
8UD6|1|2A|U|562
8UD6|1|2A|G|563
8UD6|1|2A|C|564
*
8UD6|1|2A|G|577
8UD6|1|2A|A|578
8UD6|1|2A|G|579
*
8UD6|1|2A|C|1261
8UD6|1|2A|A|1262
*
8UD6|1|2A|U|2017
8UD6|1|2A|G|2018

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2F
50S ribosomal protein L4
Chain 2U
50S ribosomal protein L20
Chain 2V
50S ribosomal protein L21
Chain 2W
50S ribosomal protein L22

Coloring options:


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