J5_8UPO_007

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8UPO|1|a|U|1758, 8UPO|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UPO_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0591

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UPO|1|a|G|1674
8UPO|1|a|C|1675
8UPO|1|a|A|1676
8UPO|1|a|A|1677
8UPO|1|a|A|1678
8UPO|1|a|A|1679
8UPO|1|a|U|1680
8UPO|1|a|G|1681
8UPO|1|a|G|1682
*
8UPO|1|a|C|1706
8UPO|1|a|G|1707
*
8UPO|1|a|U|1751
8UPO|1|a|C|1752
*
8UPO|1|a|G|1756
8UPO|1|a|A|1757
8UPO|1|a|U|1758
8UPO|1|a|A|1759
8UPO|1|a|C|1760
8UPO|1|a|C|1761
8UPO|1|a|A|1762
8UPO|1|a|G|1763
8UPO|1|a|C|1764
*
8UPO|1|a|G|1988
8UPO|1|a|G|1989
8UPO|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19