3D structure

PDB id
8UR0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8UR0|1|a|U|1758, 8UR0|1|a|G|1763
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8UR0_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0592
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8UR0|1|a|G|1674
8UR0|1|a|C|1675
8UR0|1|a|A|1676
8UR0|1|a|A|1677
8UR0|1|a|A|1678
8UR0|1|a|A|1679
8UR0|1|a|U|1680
8UR0|1|a|G|1681
8UR0|1|a|G|1682
*
8UR0|1|a|C|1706
8UR0|1|a|G|1707
*
8UR0|1|a|U|1751
8UR0|1|a|C|1752
*
8UR0|1|a|G|1756
8UR0|1|a|A|1757
8UR0|1|a|U|1758
8UR0|1|a|A|1759
8UR0|1|a|C|1760
8UR0|1|a|C|1761
8UR0|1|a|A|1762
8UR0|1|a|G|1763
8UR0|1|a|C|1764
*
8UR0|1|a|G|1988
8UR0|1|a|G|1989
8UR0|1|a|C|1990

Current chains

Chain a
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L3
Chain t
50S ribosomal protein L14
Chain y
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3316 s