J5_8URY_007

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8URY|1|a|U|1758, 8URY|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8URY_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0592

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8URY|1|a|G|1674
8URY|1|a|C|1675
8URY|1|a|A|1676
8URY|1|a|A|1677
8URY|1|a|A|1678
8URY|1|a|A|1679
8URY|1|a|U|1680
8URY|1|a|G|1681
8URY|1|a|G|1682
*
8URY|1|a|C|1706
8URY|1|a|G|1707
*
8URY|1|a|U|1751
8URY|1|a|C|1752
*
8URY|1|a|G|1756
8URY|1|a|A|1757
8URY|1|a|U|1758
8URY|1|a|A|1759
8URY|1|a|C|1760
8URY|1|a|C|1761
8URY|1|a|A|1762
8URY|1|a|G|1763
8URY|1|a|C|1764
*
8URY|1|a|G|1988
8URY|1|a|G|1989
8URY|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

Large ribosomal subunit protein bL19