3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GC*GCAGAUC
Length
23 nucleotides
Bulged bases
8UT0|1|A|U|1436
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8UT0_007 not in the Motif Atlas
Homologous match to J5_8C3A_002
Geometric discrepancy: 0.0527
The information below is about J5_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UT0|1|A|G|658
8UT0|1|A|G|659
8UT0|1|A|A|660
8UT0|1|A|G|661
8UT0|1|A|U|662
8UT0|1|A|C|663
*
8UT0|1|A|G|799
8UT0|1|A|G|800
8UT0|1|A|A|801
8UT0|1|A|C|802
*
8UT0|1|A|G|941
8UT0|1|A|U|942
8UT0|1|A|U|943
8UT0|1|A|C|944
*
8UT0|1|A|G|1375
8UT0|1|A|C|1376
*
8UT0|1|A|G|1431
8UT0|1|A|C|1432
8UT0|1|A|A|1433
8UT0|1|A|G|1434
8UT0|1|A|A|1435
8UT0|1|A|U|1436
8UT0|1|A|C|1437

Current chains

Chain A
25S rRNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain LF
60S ribosomal protein L4-A
Chain LN
60S ribosomal protein L13-A
Chain LP
60S ribosomal protein L15-A
Chain Lc
60S ribosomal protein L28
Chain Lg
60S ribosomal protein L32

Coloring options:


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