J5_8UTI_007

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8UTI|1|E|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UTI_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.084

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8UTI|1|E|C|31
8UTI|1|E|U|32
8UTI|1|E|U|33
8UTI|1|E|G|34
8UTI|1|E|U|35
*
8UTI|1|E|A|473
8UTI|1|E|A|474
8UTI|1|E|A|475
8UTI|1|E|U|476
8UTI|1|E|A|477
8UTI|1|E|A|478
8UTI|1|E|C|479
*
8UTI|1|E|G|509
8UTI|1|E|G|510
8UTI|1|E|A|511
8UTI|1|E|A|512
8UTI|1|E|U|513
8UTI|1|E|G|514
*
8UTI|1|E|C|543
8UTI|1|E|A|544
8UTI|1|E|A|545
8UTI|1|E|U|546
*
8UTI|1|E|A|592
8UTI|1|E|U|593
8UTI|1|E|A|594
8UTI|1|E|G|595

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sc

40S ribosomal protein S23-A

Chain Sg

40S ribosomal protein S30-A