J5_8UU9_003
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UA*UA
- Length
- 15 nucleotides
- Bulged bases
- 8UU9|1|A|A|577, 8UU9|1|A|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UU9_003 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.098
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UU9|1|A|U|576
8UU9|1|A|A|577
8UU9|1|A|G|578
*
8UU9|1|A|C|603
8UU9|1|A|G|604
8UU9|1|A|U|605
8UU9|1|A|G|606
8UU9|1|A|C|607
*
8UU9|1|A|G|620
8UU9|1|A|A|621
8UU9|1|A|A|622
*
8UU9|1|A|U|1306
8UU9|1|A|A|1307
*
8UU9|1|A|U|2050
8UU9|1|A|A|2051
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain E
- Large ribosomal subunit protein uL4
- Chain S
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein bL21
- Chain U
- Large ribosomal subunit protein uL22
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