J5_8V9J_011
3D structure
- PDB id
- 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGAACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8V9J|1|a|A|105, 8V9J|1|a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8V9J_011 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1032
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.2
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8V9J|1|a|C|62
8V9J|1|a|A|63
8V9J|1|a|A|64
8V9J|1|a|G|65
*
8V9J|1|a|C|102
8V9J|1|a|G|103
8V9J|1|a|A|104
8V9J|1|a|A|105
8V9J|1|a|C|106
8V9J|1|a|G|107
8V9J|1|a|G|108
8V9J|1|a|G|109
*
8V9J|1|a|C|314
8V9J|1|a|A|315
8V9J|1|a|C|316
*
8V9J|1|a|G|337
8V9J|1|a|A|338
8V9J|1|a|C|339
*
8V9J|1|a|G|350
8V9J|1|a|G|351
8V9J|1|a|C|352
8V9J|1|a|A|353
8V9J|1|a|G|354
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L14
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
Coloring options: