J5_8VFT_001
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 8VFT|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VFT_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1408
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VFT|1|5|G|19
8VFT|1|5|U|20
8VFT|1|5|G|21
*
8VFT|1|8|C|35
8VFT|1|8|G|36
8VFT|1|8|A|37
8VFT|1|8|U|38
8VFT|1|8|G|39
8VFT|1|8|A|40
8VFT|1|8|A|41
8VFT|1|8|G|42
*
8VFT|1|8|C|101
8VFT|1|8|G|102
8VFT|1|8|A|103
8VFT|1|8|A|104
8VFT|1|8|C|105
8VFT|1|8|G|106
*
8VFT|1|8|C|113
8VFT|1|8|G|114
*
8VFT|1|8|U|136
8VFT|1|8|A|137
8VFT|1|8|C|138
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain N
- eL15
- Chain X
- uL23
- Chain h
- uL29
- Chain j
- eL37
- Chain l
- eL39
Coloring options: