J5_8VFT_002
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGU(OMC)*G(2MG)AC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 8VFT|1|5|C|2289, 8VFT|1|5|U|2350
- QA status
- Modified nucleotides: OMC, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VFT_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0937
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VFT|1|5|G|1335
8VFT|1|5|G|1336
8VFT|1|5|A|1337
8VFT|1|5|G|1338
8VFT|1|5|U|1339
8VFT|1|5|OMC|1340
*
8VFT|1|5|G|1516
8VFT|1|5|2MG|1517
8VFT|1|5|A|1518
8VFT|1|5|C|1519
*
8VFT|1|5|G|1658
8VFT|1|5|U|1659
8VFT|1|5|U|1660
8VFT|1|5|C|1661
*
8VFT|1|5|G|2288
8VFT|1|5|C|2289
8VFT|1|5|C|2290
*
8VFT|1|5|G|2345
8VFT|1|5|C|2346
8VFT|1|5|A|2347
8VFT|1|5|G|2348
8VFT|1|5|A|2349
8VFT|1|5|U|2350
8VFT|1|5|OMC|2351
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain e
- eL32
- Chain r
- eL28
Coloring options: