J5_8VKV_006
3D structure
- PDB id
- 8VKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8VKV|1|a|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VKV|1|a|C|584
8VKV|1|a|G|585
8VKV|1|a|A|586
8VKV|1|a|C|587
8VKV|1|a|U|588
8VKV|1|a|U|589
*
8VKV|1|a|A|668
8VKV|1|a|G|669
8VKV|1|a|A|670
8VKV|1|a|C|671
*
8VKV|1|a|G|809
8VKV|1|a|U|810
8VKV|1|a|U|811
8VKV|1|a|C|812
*
8VKV|1|a|G|1195
8VKV|1|a|C|1196
*
8VKV|1|a|G|1250
8VKV|1|a|C|1251
8VKV|1|a|G|1252
8VKV|1|a|A|1253
8VKV|1|a|A|1254
8VKV|1|a|U|1255
8VKV|1|a|G|1256
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Ribosomal protein L21
- Chain l
- 50S ribosomal protein L4
- Chain o
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L15
- Chain z
- 50S ribosomal protein L20
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