J5_8VKW_001

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8VKW|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VKW_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1147

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VKW|1|A|C|44
8VKW|1|A|G|45
8VKW|1|A|A|46
8VKW|1|A|U|47
8VKW|1|A|G|48
8VKW|1|A|A|49
8VKW|1|A|A|50
8VKW|1|A|G|51
*
8VKW|1|A|C|113
8VKW|1|A|G|114
8VKW|1|A|A|115
8VKW|1|A|A|116
8VKW|1|A|U|117
8VKW|1|A|G|118
*
8VKW|1|A|C|127
8VKW|1|A|G|128
*
8VKW|1|A|C|147
8VKW|1|A|A|148
8VKW|1|A|C|149
*
8VKW|1|A|G|175
8VKW|1|A|G|176
8VKW|1|A|G|177

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34