J5_8VOP_004

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8VOP|1|a|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|C|47
8VOP|1|a|G|48
8VOP|1|a|A|49
8VOP|1|a|U|50
8VOP|1|a|G|51
8VOP|1|a|A|52
8VOP|1|a|A|53
8VOP|1|a|G|54
*
8VOP|1|a|C|116
8VOP|1|a|G|117
8VOP|1|a|A|118
8VOP|1|a|A|119
8VOP|1|a|U|120
8VOP|1|a|G|121
*
8VOP|1|a|C|130
8VOP|1|a|A|131
*
8VOP|1|a|U|148
8VOP|1|a|A|149
8VOP|1|a|U|150
*
8VOP|1|a|A|176
8VOP|1|a|G|177
8VOP|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34