J5_8VRL_002
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CCG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8VRL|1|A|C|619, 8VRL|1|A|U|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VRL_002 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1525
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VRL|1|A|C|618
8VRL|1|A|C|619
8VRL|1|A|G|620
*
8VRL|1|A|C|652
8VRL|1|A|G|653
8VRL|1|A|U|654
8VRL|1|A|G|655
8VRL|1|A|C|656
*
8VRL|1|A|G|669
8VRL|1|A|A|670
8VRL|1|A|G|671
*
8VRL|1|A|C|1376
8VRL|1|A|A|1377
*
8VRL|1|A|U|2241
8VRL|1|A|G|2242
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain R
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein bL21
- Chain T
- Large ribosomal subunit protein uL22
- Chain b
- 50S ribosomal protein L32
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