J5_8VSA_006
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8VSA|1|23S|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8VSA_006 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0733
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8VSA|1|23S|C|584
8VSA|1|23S|G|585
8VSA|1|23S|A|586
8VSA|1|23S|C|587
8VSA|1|23S|U|588
8VSA|1|23S|U|589
*
8VSA|1|23S|A|668
8VSA|1|23S|G|669
8VSA|1|23S|A|670
8VSA|1|23S|C|671
*
8VSA|1|23S|G|809
8VSA|1|23S|U|810
8VSA|1|23S|U|811
8VSA|1|23S|C|812
*
8VSA|1|23S|G|1195
8VSA|1|23S|C|1196
*
8VSA|1|23S|G|1250
8VSA|1|23S|C|1251
8VSA|1|23S|G|1252
8VSA|1|23S|A|1253
8VSA|1|23S|A|1254
8VSA|1|23S|U|1255
8VSA|1|23S|G|1256
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L04
- 50S ribosomal protein L4
- Chain L15
- 50S ribosomal protein L15
- Chain L20
- 50S ribosomal protein L20
- Chain L21
- Ribosomal protein L21
- Chain L35
- 50S ribosomal protein L35
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