J5_8VTV_003

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAG*CGUGC*GAG*CA*UG

Length

15 nucleotides

Bulged bases

8VTV|1|1A|A|532, 8VTV|1|1A|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VTV_003 not in the Motif Atlas

Homologous match to J5_9DFE_003

Geometric discrepancy: 0.0772

The information below is about J5_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8VTV|1|1A|C|531
8VTV|1|1A|A|532
8VTV|1|1A|G|533
*
8VTV|1|1A|C|560
8VTV|1|1A|G|561
8VTV|1|1A|U|562
8VTV|1|1A|G|563
8VTV|1|1A|C|564
*
8VTV|1|1A|G|577
8VTV|1|1A|A|578
8VTV|1|1A|G|579
*
8VTV|1|1A|C|1261
8VTV|1|1A|A|1262
*
8VTV|1|1A|U|2017
8VTV|1|1A|G|2018

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21

Chain 1W

50S ribosomal protein L22