J5_8VTV_010

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8VTV|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8VTV_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.073

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VTV|1|2A|C|47
8VTV|1|2A|G|48
8VTV|1|2A|A|49
8VTV|1|2A|U|50
8VTV|1|2A|G|51
8VTV|1|2A|A|52
8VTV|1|2A|A|53
8VTV|1|2A|G|54
*
8VTV|1|2A|C|116
8VTV|1|2A|G|117
8VTV|1|2A|A|118
8VTV|1|2A|A|119
8VTV|1|2A|U|120
8VTV|1|2A|G|121
*
8VTV|1|2A|C|130
8VTV|1|2A|G|131
*
8VTV|1|2A|C|148
8VTV|1|2A|A|149
8VTV|1|2A|C|150
*
8VTV|1|2A|G|176
8VTV|1|2A|G|177
8VTV|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23