J5_8VV4_002

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

8VV4|1|1|A|532, 8VV4|1|1|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VV4|1|1|C|531
8VV4|1|1|A|532
8VV4|1|1|G|533
*
8VV4|1|1|C|560
8VV4|1|1|G|561
8VV4|1|1|U|562
8VV4|1|1|A|563
8VV4|1|1|C|564
*
8VV4|1|1|G|577
8VV4|1|1|G|578
8VV4|1|1|G|579
*
8VV4|1|1|C|1261
8VV4|1|1|A|1262
*
8VV4|1|1|U|2017
8VV4|1|1|G|2018

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain R

Ribosomal protein L21

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32