J5_8VVQ_008
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8VVQ|1|ZA|A|92, 8VVQ|1|ZA|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVQ|1|ZA|C|53
8VVQ|1|ZA|A|54
8VVQ|1|ZA|U|55
8VVQ|1|ZA|G|56
*
8VVQ|1|ZA|C|89
8VVQ|1|ZA|G|90
8VVQ|1|ZA|A|91
8VVQ|1|ZA|A|92
8VVQ|1|ZA|U|93
8VVQ|1|ZA|G|94
8VVQ|1|ZA|G|95
8VVQ|1|ZA|C|96
*
8VVQ|1|ZA|G|434
8VVQ|1|ZA|A|435
8VVQ|1|ZA|G|436
*
8VVQ|1|ZA|C|457
8VVQ|1|ZA|A|458
8VVQ|1|ZA|C|459
*
8VVQ|1|ZA|G|470
8VVQ|1|ZA|G|471
8VVQ|1|ZA|C|472
8VVQ|1|ZA|A|473
8VVQ|1|ZA|G|474
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain EB
- S4
- Chain GB
- eS6
- Chain HC
- eukaryotic elongation factor 1A
- Chain IB
- S8
- Chain JB
- S9
- Chain U
- L23
- Chain YB
- S24
Coloring options: