J5_8WHX_001

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8WHX|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WHX_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0753

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8WHX|1|A|C|44
8WHX|1|A|G|45
8WHX|1|A|A|46
8WHX|1|A|U|47
8WHX|1|A|G|48
8WHX|1|A|A|49
8WHX|1|A|A|50
8WHX|1|A|G|51
*
8WHX|1|A|C|113
8WHX|1|A|G|114
8WHX|1|A|A|115
8WHX|1|A|A|116
8WHX|1|A|U|117
8WHX|1|A|G|118
*
8WHX|1|A|C|127
8WHX|1|A|G|128
*
8WHX|1|A|C|147
8WHX|1|A|A|148
8WHX|1|A|C|149
*
8WHX|1|A|G|175
8WHX|1|A|G|176
8WHX|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23