J5_8WHY_006

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

8WHY|1|A|A|1975, 8WHY|1|A|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WHY_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0876

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8WHY|1|A|G|1892
8WHY|1|A|C|1893
8WHY|1|A|A|1894
8WHY|1|A|A|1895
8WHY|1|A|A|1896
8WHY|1|A|A|1897
8WHY|1|A|U|1898
8WHY|1|A|G|1899
8WHY|1|A|C|1900
*
8WHY|1|A|G|1924
8WHY|1|A|A|1925
*
8WHY|1|A|U|1968
8WHY|1|A|G|1969
*
8WHY|1|A|C|1973
8WHY|1|A|A|1974
8WHY|1|A|A|1975
8WHY|1|A|A|1976
8WHY|1|A|C|1977
8WHY|1|A|C|1978
8WHY|1|A|A|1979
8WHY|1|A|G|1980
8WHY|1|A|U|1981
*
8WHY|1|A|A|2212
8WHY|1|A|A|2213
8WHY|1|A|C|2214

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain N

50S ribosomal protein L14

Chain S

50S ribosomal protein L19