J5_8WIC_001

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8WIC|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WIC_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0897

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8WIC|1|A|C|44
8WIC|1|A|G|45
8WIC|1|A|A|46
8WIC|1|A|U|47
8WIC|1|A|G|48
8WIC|1|A|A|49
8WIC|1|A|A|50
8WIC|1|A|G|51
*
8WIC|1|A|C|113
8WIC|1|A|G|114
8WIC|1|A|A|115
8WIC|1|A|A|116
8WIC|1|A|U|117
8WIC|1|A|G|118
*
8WIC|1|A|C|127
8WIC|1|A|G|128
*
8WIC|1|A|C|147
8WIC|1|A|A|148
8WIC|1|A|C|149
*
8WIC|1|A|G|175
8WIC|1|A|G|176
8WIC|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23