J5_8WV1_026
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8WV1|1|A|U|2098, 8WV1|1|A|G|2440, 8WV1|1|A|G|2441, 8WV1|1|A|A|2442
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8WV1_026 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1505
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8WV1|1|A|U|2096
8WV1|1|A|U|2097
8WV1|1|A|U|2098
8WV1|1|A|A|2099
*
8WV1|1|A|U|2255
8WV1|1|A|U|2256
8WV1|1|A|U|2257
8WV1|1|A|G|2258
*
8WV1|1|A|C|2270
8WV1|1|A|G|2271
*
8WV1|1|A|C|2293
8WV1|1|A|G|2294
*
8WV1|1|A|C|2439
8WV1|1|A|G|2440
8WV1|1|A|G|2441
8WV1|1|A|A|2442
8WV1|1|A|U|2443
8WV1|1|A|A|2444
8WV1|1|A|A|2445
8WV1|1|A|A|2446
8WV1|1|A|A|2447
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 13
- 50S ribosomal protein L33
- Chain C
- 50S ribosomal protein L2
- Chain K
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L25
- Chain V
- Large ribosomal subunit protein bL27
- Chain W
- Large ribosomal subunit protein bL28
Coloring options: