J5_8WV1_027

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8WV1|1|a|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WV1_027 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.151

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8WV1|1|a|C|46
8WV1|1|a|G|47
8WV1|1|a|A|48
8WV1|1|a|U|49
8WV1|1|a|G|50
8WV1|1|a|A|51
8WV1|1|a|A|52
8WV1|1|a|G|53
*
8WV1|1|a|C|114
8WV1|1|a|G|115
8WV1|1|a|A|116
8WV1|1|a|A|117
8WV1|1|a|U|118
8WV1|1|a|G|119
*
8WV1|1|a|C|128
8WV1|1|a|G|129
*
8WV1|1|a|C|148
8WV1|1|a|A|149
8WV1|1|a|C|150
*
8WV1|1|a|G|165
8WV1|1|a|G|166
8WV1|1|a|G|167

Current chains

Chain a

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain s

50S ribosomal protein L23